TOPDB Topology Data Bank of Transmembrane Proteins
Topology, Structure and Prediction.
Database revision: (4190 entries, 75211 topology data) Quick search:    

Database status

Database revision:
Revision date: 01/01/70
Entries: 4190
Topology data: 75211
Alpha helical proteins: 4067
Beta barrel proteins: 123
PubMed links: 4270
PDB links: 12816
UniProt links: 4190
Visitors: 614801

Download

XML files

Description Download
All TOPDB entries in one xml file topdb all
Alpha bitopic TOPDB entries in one xml file topdb ab
Alpha polytopic TOPDB entries in one xml file topdb ap
Beta barrel TOPDB entries in one xml file topdb bp

Sequences and topologies

Description Download
All TOPDB entries in one file topdb all
Alpha bitopic TOPDB entries in one file topdb ab
Alpha polytopic TOPDB entries in one file topdb ap
Beta barrel TOPDB entries in one file topdb bp

Sequences

Description Download
All TOPDB entries in one file topdb all
Alpha bitopic TOPDB entries in one file topdb ab
Alpha polytopic TOPDB entries in one file topdb ap
Beta barrel TOPDB entries in one file topdb bp

Repository

  • Export the latest version of TOPDB:
    >svn export http://w2.enzim.hu/topdb/topdb_releases
  • Checkout the latest working copy of TOPDB:
    >svn checkout http://w2.enzim.hu/topdb/topdb_releases
  • Update to the latest version of TOPDB:
    >cd working_copy_of_topdb; svn update
  • Get an old release:
    >svn export -r RELEASE_NUMBER http://w2.enzim.hu/topdb/topdb_releases
  • Get an old release as tgz file:
    Release number:
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