TOPDB Topology Data Bank of Transmembrane Proteins
Topology, Structure and Prediction.
Database revision: (4190 entries, 75211 topology data) Quick search:    

Database status

Database revision:
Revision date: 01/01/70
Entries: 4190
Topology data: 75211
Alpha helical proteins: 4067
Beta barrel proteins: 123
PubMed links: 4270
PDB links: 12816
UniProt links: 4190
Visitors: 627522

Documents related to TOPDB

Manuscripts

Tusnády GE, Kalmár L and Simon I (2008)
TOPDB: Topology Data Bank of Transmembrane Proteins.
Nucleic Acids Research 36 Database issue, D234-D239.
[Journal] [Medline] [PDF]
Dobson L, Langó T, Reményi I and Tusnády GE (2015)
Expediting topology data gathering for the TOPDB database.
Nucleic Acids Research 43 Database issue, D283-D289.
[Journal] [Medline] [PDF]

Related manuscripts

Gardy JL, Spencer C, Wang K, Ester M, Tusnády GE, Simon I, Hua S, deFays K, Lambert C, Nakai K and Brinkman FS (2003)
PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria.
Nucleic Acids Res 31, 3613-3617.
[Journal] [Medline] [PDF] [Server]
Dosztányi Zs, Magyar Cs, Tusnády GE, Cserző M, Fiser A and Simon I (2003)
Servers for sequence-structure relationship analysis and prediction.
Nucleic Acids Res 31, 3359-3363.
[Journal] [Medline] [PDF] [Servers]
Tusnády GE, Dosztányi Zs and Simon I (2004)
Transmembrane proteins in protein data bank: identification and classification.
Bioinformatics 20, 2964-2972.
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Dosztányi Zs and Simon I (2004)
TMDET: web server for detecting transmembrane domains by using 3D structure of proteins
Bioinformatics 21, 1276-7.
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Dosztányi Zs and Simon I (2005)
PDB_TM: selection and membrane localization of transmembrane proteins in the Protein Data Bank.
Nucleic Acids Research 33 Database Issue, D275-D278.
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Kalmár L, Hegyi H, Tompa P and Simon I. (2008)
TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
Bioinformatics 24, 1469-70.
[Journal] [Medline] [PDF] [Server]
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